RMER15-int (DF0002155)
ERV3 Endogenous Retrovirus from Muridae.
Description
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
ORF from 530-1741 contains ERVL gag protein >50% similar to HERL18 gag protein; in that way similar to MaLRs, though MaLR origin much older and proteins don't appear related; Lx8 fragment at pos 4140 to 4997.
Classification
| Accession | Name | Wikipedia |
|---|---|---|
| Type | Retrotransposon | Article |
| Class | LTR | Article |
| Superfamily | ERVL | Article |
Hit Statistics
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 4999 positions long. The average length of non-redundant hits to the model is 460.2. This table shows the number of hits above score thresholds:
| Species | Gathering | Trusted | ||
|---|---|---|---|---|
| non-redundant | all hits | non-redundant | all hits | |
| Mus musculus | 4158 | 60989 | 3348 | 46984 |
External Database Links
- Repbase : RMER15-int [Requires Repbase registration]