RLTR13B1 (DF0002003)
Mouse subfamily of LTR retrotransposons
Description
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
6 bp TSDs.
References
-
The UCSC Genome Browser Database.
Karolchik D, Baertsch R, Diekhans M, Furey TS, Hinrichs A, Lu YT, Roskin KM, Schwartz M, Sugnet CW, Thomas DJ, Weber RJ, Haussler D, Kent WJ, ;
Nucleic Acids Res 2003;31:51-54. Pubmed
Classification
| Accession | Name | Wikipedia |
|---|---|---|
| Type | Retrotransposon | Article |
| Class | LTR | Article |
| Superfamily | ERVK | Article |
Hit Statistics
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 893 positions long. The average length of non-redundant hits to the model is 786.6. This table shows the number of hits above score thresholds:
| Species | Gathering | Trusted | ||
|---|---|---|---|---|
| non-redundant | all hits | non-redundant | all hits | |
| Mus musculus | 898 | 11820 | 874 | 10774 |
External Database Links
- Repbase : RLTR13B1 [Requires Repbase registration]