Repeated region of mouse chr 6 with 60 tandem copies of a complex pattern.
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The region of mouse chromosome 6 (build 37.1, reference assembly C57BL/6J, NC_000072) located at 114,441,515-114,587,670 contains 60 tandem copies of a pattern with average length 2400 bps. The pattern consists of three conservative (98% similarity) parts separated by low complexity insertions of variable length. The general scheme of periodicity is as follows: (CA)n core1 (CT)m core2 (CT)k core3, where 12 <= n <= 40, 30 <= m <= 166, k = 12, and conservative parts core1, core2 and core3 are of the maximum lengths respectively 88, 663 and 1566.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 2548 positions long. The average length of non-redundant hits to the model is 1770. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : IMPB_01 [Requires Repbase registration]