Internal portion of an LTR retrotransposon
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
The family appears to be nonautonomous. LTRs listed as IAPLTR4.
The UCSC Genome Browser Database.
Karolchik D, Baertsch R, Diekhans M, Furey TS, Hinrichs A, Lu YT, Roskin KM, Schwartz M, Sugnet CW, Thomas DJ, Weber RJ, Haussler D, Kent WJ, ;
Nucleic Acids Res 2003;31:51-54. Pubmed
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 1470 positions long. The average length of non-redundant hits to the model is 491.3. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : IAPLTR4_I [Requires Repbase registration]