Endogenous retrovirus - internal portion.
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
LTR is related to RMER46-type families of LTRs. The unusual feature is that 3' termini of IAPEY4_LTR is TA instead of CA. It is flanked by 6 bp TSDs.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 7673 positions long. The average length of non-redundant hits to the model is 2017.1. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : IAPEY4_I [Requires Repbase registration]