Mouse long terminal repeat
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
LTR of the IAPEY3 subfamily, internal sequences are listed as IAPEY3_I. The family is new and individual copies share 95-98% identity with the consensus. 6 bp TSDs.
The UCSC Genome Browser Database.
Karolchik D, Baertsch R, Diekhans M, Furey TS, Hinrichs A, Lu YT, Roskin KM, Schwartz M, Sugnet CW, Thomas DJ, Weber RJ, Haussler D, Kent WJ, ;
Nucleic Acids Res 2003;31:51-54. Pubmed
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 332 positions long. The average length of non-redundant hits to the model is 299.1. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : IAPEY3_LTR [Requires Repbase registration]