AmnL2-1 (DF0001732)

AmnL2-1 subfamily


The ORF 2-2488 encodes (part of) a pol most closely (45% id., 63% sim.) related to CR1-8_DR_pol and CR1-9_DR_pol in zebrafish. Pos 2396-2533 correspond to UCON49. Currently, AmnL2-1a only differs by a 90 bp replacement of a 22 bp sequence at 2509-2532, but no sites seem to cosegregate.


Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily L2

Hit Statistics

The model is 2613 positions long. The average length of non-redundant hits to the model is 252.2. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 48 80 24 33
Homo sapiens 394 3578 100 374

External Database Links

None recorded for this entry