TRANSIB4 (DF0001722)

TRANSIB4 is a DNA transposon, a consensus sequence.

Description

Transib4 belongs to the Transib superfamily of DNA transposons. It generated 5-bp duplications of the CantG target sites upon its integration into the genome, and has 40-bp terminal inverted repeats. The encoded transposase is not perfectly recovered since the genome harbors only a small number of Transib4 copies, which are damaged by mutations. Transib4 encodes the Transib4p transposase (positions 497-2219).

References

  1. Molecular paleontology of transposable elements in the Drosophila melanogaster genome.
    Kapitonov VV, Jurka J;
    Proc Natl Acad Sci U S A 2003;100:6569-6574. Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily CMC-Transib

Hit Statistics

The model is 2610 positions long. The average length of non-redundant hits to the model is 329. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Drosophila melanogaster 38 161 31 105

External Database Links

  • Repbase : Transib4 [Requires Repbase registration]