TRANSIB1 (DF0001719)

Transib1 is a DNA transposon, a consensus sequence.

Description

TRANSIB1 belongs to the TRANSIB family of DNA transposons. It generated duplications of the CNNCG target sites upon its integration into the genome, has 43-bp terminal inverted repeats, and encodes remnants of a DDE transposase. TRANSIB1 encodes the 699-aa TRANSIB1p transposase (pos. 272-290, 547-2627).

References

  1. Molecular paleontology of transposable elements in the Drosophila melanogaster genome.
    Kapitonov VV, Jurka J;
    Proc Natl Acad Sci U S A 2003;100:6569-6574. Pubmed

  2. RAG1 core and V(D)J recombination signal sequences were derived from Transib transposons.
    Kapitonov VV, Jurka J;
    PLoS Biol 2005;3:e181-e181. Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily CMC-Transib

Hit Statistics

The model is 3014 positions long. The average length of non-redundant hits to the model is 560.4. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Drosophila melanogaster 28 188 20 144

External Database Links

  • Repbase : Transib1 [Requires Repbase registration]