TC1_DM is a DNA transposon, a consensus sequence.
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
TC1_DM belongs to the Tc1 superfamily of DNA transposons. It has generated duplications of TA target sites upon its integration into the genome, has 26-bp imperfect terminal inverted repeats, and encodes a 331-aa transposase similar to the C.elegans TC1 transposase.
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 1666 positions long. The average length of non-redundant hits to the model is 581.9. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : TC1_DM [Requires Repbase registration]