ROO_I (DF0001695)

ROO_I is an internal portion of endogenous retrovirus ROO

Description

ROO belongs to the BCDPR superfamily of retroviruses. Gag, RT, endonuclease and env are encoded by one long ORF (position 855-7934; 2360 aa-long polyprotein). ROO generates 5 bp-long duplication of targets sites. It's an active mobile element.

References

  1. B104, a new dispersed repeated gene family in Drosophila melanogaster and its analogies with retroviruses.
    Scherer G, Tschudi C, Perera J, Delius H, Pirrotta V;
    J Mol Biol 1982;157:435-451. Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Pao

Hit Statistics

The model is 8256 positions long. The average length of non-redundant hits to the model is 2820. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Drosophila melanogaster 373 524 362 497

External Database Links

  • Repbase : ROO_I [Requires Repbase registration]