ROO_I (DF0001695)
ROO_I is an internal portion of endogenous retrovirus ROO
Description
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
ROO belongs to the BCDPR superfamily of retroviruses. Gag, RT, endonuclease and env are encoded by one long ORF (position 855-7934; 2360 aa-long polyprotein). ROO generates 5 bp-long duplication of targets sites. It's an active mobile element.
References
-
B104, a new dispersed repeated gene family in Drosophila melanogaster and its analogies with retroviruses.
Scherer G, Tschudi C, Perera J, Delius H, Pirrotta V;
J Mol Biol 1982;157:435-451. Pubmed
Classification
| Accession | Name | Wikipedia |
|---|---|---|
| Type | Retrotransposon | Article |
| Class | LTR | Article |
| Superfamily | Pao |
Hit Statistics
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 8256 positions long. The average length of non-redundant hits to the model is 2820. This table shows the number of hits above score thresholds:
| Species | Gathering | Trusted | ||
|---|---|---|---|---|
| non-redundant | all hits | non-redundant | all hits | |
| Drosophila melanogaster | 373 | 524 | 362 | 497 |
External Database Links
- Repbase : ROO_I [Requires Repbase registration]