ROOA_I is an internal portion of the ROOA endogenous retrovirus
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
ROOA is a family of ancient endogenous retroviruses that were active in the D. melanogaster genome ~2.5 Myr ago. ROOA belongs to the BCDPR superfamily of retroviruses. The gag and env regions are not complete because of a lack of sequence data. The reverse transcriptase and endonuclease domains are encoded by the ~4000-bp ORF. It encodes 1351-aa polyprotein (ROOApol, positions 1298-5350).
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 6849 positions long. The average length of non-redundant hits to the model is 864.6. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : ROOA_I [Requires Repbase registration]