ROOA_I (DF0001693)

ROOA_I is an internal portion of the ROOA endogenous retrovirus

Description

ROOA is a family of ancient endogenous retroviruses that were active in the D. melanogaster genome ~2.5 Myr ago. ROOA belongs to the BCDPR superfamily of retroviruses. The gag and env regions are not complete because of a lack of sequence data. The reverse transcriptase and endonuclease domains are encoded by the ~4000-bp ORF. It encodes 1351-aa polyprotein (ROOApol, positions 1298-5350).

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Pao

Hit Statistics

The model is 6849 positions long. The average length of non-redundant hits to the model is 864.6. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Drosophila melanogaster 125 951 98 747

External Database Links

  • Repbase : ROOA_I [Requires Repbase registration]