QUASIMODO_I is an internal portion of QUASIMODO retrovirus-like element
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
LTR of QUASIMODO retrotransposon. It may be an active retrovirus since some of its copies are identical. It generates duplication of the TATAT target-site upon its integration into genome. QUASIMODO_I internal sequence encodes gag (position 406-1413), pol (position 1344-4613) and env-like (position 4477-6033) polyproteins.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 6060 positions long. The average length of non-redundant hits to the model is 1071. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : QUASIMODO_I [Requires Repbase registration]