PROTOP_A (DF0001685)

Nonautonomous form of PROTOP DNA transposon.

Description

Nonautonomous DNA transposon derived from autonomous P-like transposon PROTOP (proto-P). PROTOP_A has perfect 30 bp-long TIRs and it generates 7 bp-long duplications of target sites upon its integration in the genome.

References

  1. [Hoppel-family of mobile elements of Drosophila melanogaster, flanked by short inverted repeats and having preferential localization in the heterochromatin regions of the genome].
    Kurenova EV, LeÄ­bovich BA, Bass IA, Bebikhov DV, Pavlova MN, Danilevskaia ON;
    Genetika 1990;26:1701-1712. Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily P

Hit Statistics

The model is 1105 positions long. The average length of non-redundant hits to the model is 554.1. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Drosophila melanogaster 601 3795 502 2447

External Database Links

  • Repbase : PROTOP_A [Requires Repbase registration]