PROTOP (DF0001684)

Autonomous DNA transposon; a molecular fossil.

Description

The PROTOP consensus sequence encodes PROTOPp, a 855-aa P-like transposase (positions 1221-3785, just one ORF). PROTOP has perfect 31 bp-long TIRs and its copies are flanked by 7-bp target site duplications generated upon their integration in the genome. All P-like transposases, including PROTOPp (positions 31-89), contain a conserved ~60-aa zinc finger motif (smart00692, DM3) at their N-terminus. The DM3 motif is located downstream of the previously reported zinc finger motif.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily P

Hit Statistics

The model is 4480 positions long. The average length of non-redundant hits to the model is 462.2. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Drosophila melanogaster 262 4206 231 2693

External Database Links

  • Repbase : PROTOP [Requires Repbase registration]