NOMAD_I (DF0001678)

NOMAD_I is an internal part of retrovirus NOMAD.

Description

NOMAD_I is an internal part of the NOMAD endogenous retrovirus flanked by the NOMAD_LTR long terminal repeat. NOMAD was active recently since its provirus copies are flanked by identical LTRs and its ORFs does not have many false stop-codons. NOMAD generates 4 bp-long target-site duplications [1].

References

  1. Molecular characterization of a retrotransposon in Drosophila melanogaster, nomad, and its relationship to other retrovirus-like mobile elements.
    Whalen JH, Grigliatti TA;
    Mol Gen Genet 1998;260:401-409. Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Gypsy Article

Hit Statistics

The model is 6572 positions long. The average length of non-redundant hits to the model is 907. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Drosophila melanogaster 323 2949 211 2248

External Database Links

  • Repbase : NOMAD_I [Requires Repbase registration]