NINJA_I (DF0001675)

LTR retrotransposon NINJA, internal sequence.

Description

This is the internal sequence of LTR retrotransposon NINJA, its LTR is NINJA_LTR. It contains two open reading frames (ORFs), and the pol region is divided between two ORFs in contrast to the organization of other retrotransposons. An alignment analysis of the reverse transcriptase sequences suggested that the NINJA element is the first Drosophila retrotransposon belonging to the PAO subgroup [1].

References

  1. Molecular structure of the transposable element ninja in Drosophila simulans.
    Ogura K, Takechi S, Nakayama T, Yamamoto MT;
    Genes Genet Syst 1996;71:1-8. Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Pao

Hit Statistics

The model is 6011 positions long. The average length of non-redundant hits to the model is 934.2. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Drosophila melanogaster 245 393 232 315

External Database Links

  • Repbase : NINJA_I [Requires Repbase registration]