MAX_I is an internal portion of the MAX endogenous retrovirus.
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
MAX is a family of endogenous retroviruses that belong to the BSCDRP (or BEL-PAO) superfamily. It is flanked by 5-bp target site duplications. MAX_I encodes the 1830-aa MAXp polyprotein (positions 1389-6891) and it is flanked by 99% identical MAX_LTR long terminal repeats.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 7914 positions long. The average length of non-redundant hits to the model is 1033.4. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : MAX_I [Requires Repbase registration]