LOOPER1_DM (DF0001663)

LOOPER1_DM DNA transposon

Description

LOOPER1_DM belongs to the Looper/PiggyBac superfamily of "cut and paste" DNA transposons. This family was active in a recent past (several million years ago). It has 16-bp TIRs (one mismatch) and its copies are flanked by the 4-bp TTAA target site duplications. LOOPER1_DM encodes the Looper1DMp transposase (positions 505-1542). Looper1DMp is closer to Looper/PiggyBac transposases identified in the human genome than to the PiggyBac transposase found in moth.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily PiggyBac

Hit Statistics

The model is 1881 positions long. The average length of non-redundant hits to the model is 418.4. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Drosophila melanogaster 14 20 14 19

External Database Links

  • Repbase : LOOPER1_DM [Requires Repbase registration]