IVK_DM (DF0001660)

IVK_DM is a non-LTR retrotransposon

Description

IVK_DM belongs to the JOCKEY clade of non-LTR retrotransposons. It generates ~10-bp target site duplications upon its integration into the genome. IVK_DM encodes gag-like (ORF1: 192-1511) and reverse transcriptase (ORF2: 1607-5344) polyproteins.

References

  1. A search for reverse transcriptase-coding sequences reveals new non-LTR retrotransposons in the genome of Drosophila melanogaster.
    Berezikov E, Bucheton A, Busseau I;
    Genome Biol 2000;1:RESEARCH0012-RESEARCH0012. Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily I

Hit Statistics

The model is 5402 positions long. The average length of non-redundant hits to the model is 1296. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Drosophila melanogaster 93 194 78 151

External Database Links

  • Repbase : IVK_DM [Requires Repbase registration]