Invader6_I (DF0001658)

INVADER6_I is an internal portion of the INVADER6 endogenous retrovirus.

Description

INVADER6 is a family of Gypsy-like endogenous retroviruses and it belongs to the INVADER group. INVADER6_I is an internal portion of the INVADER6 endogenous retrovirus. INVADER6_I is flanked by 6% divergent LTRs. Therefore, INVADER6 is expected to be younger than 1 Myr. The internal sequence in incomplete. Presumably, an active INVADER6_I encoded a long polyprotein composed of gag, protease, integrase and reverse transcriptase domains. The corresponding ORF present in the genomic copy of INVADER6_I is slightly damaged by deletions and stop codons.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Gypsy Article

Hit Statistics

The model is 4099 positions long. The average length of non-redundant hits to the model is 809.2. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Drosophila melanogaster 150 2703 117 2152

External Database Links

  • Repbase : INVADER6_I [Requires Repbase registration]