INVADER6_I is an internal portion of the INVADER6 endogenous retrovirus.
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
INVADER6 is a family of Gypsy-like endogenous retroviruses and it belongs to the INVADER group. INVADER6_I is an internal portion of the INVADER6 endogenous retrovirus. INVADER6_I is flanked by 6% divergent LTRs. Therefore, INVADER6 is expected to be younger than 1 Myr. The internal sequence in incomplete. Presumably, an active INVADER6_I encoded a long polyprotein composed of gag, protease, integrase and reverse transcriptase domains. The corresponding ORF present in the genomic copy of INVADER6_I is slightly damaged by deletions and stop codons.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 4099 positions long. The average length of non-redundant hits to the model is 809.2. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : INVADER6_I [Requires Repbase registration]