HOBO is an autonomous DNA transposon.
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
HOBO transposase is encoded by CDS 316-2250; HOBO induces 8 bp target site duplications upon its integration in the genome; it has 12-bp terminal inverted repeats.
The structure of hobo transposable elements and their insertion sites.
Streck RD, Macgaffey JE, Beckendorf SK;
EMBO J 1986;5:3615-3623. Pubmed
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 3016 positions long. The average length of non-redundant hits to the model is 476.7. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : HOBO [Requires Repbase registration]