GYPSY5_I is an internal portion of GYPSY5 endogenous retrovirus.
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
GYPSY5_I is an internal portion of GYPSY5 endogenous retrovirus. GYPSY5's long terminal repeat LTR is GYPSY5_LTR. GYPSY5 may be an active retrovirus since it is flanked by 100% identical LTRs. Target site duplication is 4 bp-long (CCAG). GYPSY5 belongs to the same group of GYPSY-like retroviruses together with ZAM, ACCORD, TIRANT and QUASIMODO retroviruses.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 6509 positions long. The average length of non-redundant hits to the model is 809.3. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : GYPSY5_I [Requires Repbase registration]