Gypsy5_I (DF0001627)

GYPSY5_I is an internal portion of GYPSY5 endogenous retrovirus.

Description

GYPSY5_I is an internal portion of GYPSY5 endogenous retrovirus. GYPSY5's long terminal repeat LTR is GYPSY5_LTR. GYPSY5 may be an active retrovirus since it is flanked by 100% identical LTRs. Target site duplication is 4 bp-long (CCAG). GYPSY5 belongs to the same group of GYPSY-like retroviruses together with ZAM, ACCORD, TIRANT and QUASIMODO retroviruses.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Gypsy Article

Hit Statistics

The model is 6509 positions long. The average length of non-redundant hits to the model is 809.3. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Drosophila melanogaster 159 2667 125 2065

External Database Links

  • Repbase : GYPSY5_I [Requires Repbase registration]