GYPSY4_I is an internal portion of the GYPSY4 endogenous retrovirus
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GYPSY4_I is an internal portion of the GYPSY4 endogenous retrovirus. GYPSY4's long terminal repeat is GYPSY4_LTR. GYPSY4 has lost activity recently since its genomic copies are flanked by 1% divergent LTRs. Target site duplicates are 4 bp-long. GYPSY3_I internal sequence encodes GAG, POL, ENV
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 6288 positions long. The average length of non-redundant hits to the model is 1052. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : GYPSY4_I [Requires Repbase registration]