Gypsy4_I (DF0001625)

GYPSY4_I is an internal portion of the GYPSY4 endogenous retrovirus

Description

GYPSY4_I is an internal portion of the GYPSY4 endogenous retrovirus. GYPSY4's long terminal repeat is GYPSY4_LTR. GYPSY4 has lost activity recently since its genomic copies are flanked by 1% divergent LTRs. Target site duplicates are 4 bp-long. GYPSY3_I internal sequence encodes GAG, POL, ENV

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Gypsy Article

Hit Statistics

The model is 6288 positions long. The average length of non-redundant hits to the model is 1052. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Drosophila melanogaster 317 3693 252 3151

External Database Links

  • Repbase : GYPSY4_I [Requires Repbase registration]