GYPSY3_I is an internal portion of GYPSY3 endogenous retrovirus.
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
GYPSY3_I is an internal portion of GYPSY3 endogenous retrovirus. GYPSY3's long terminal repeat LTR is GYPSY3_LTR. Presumably, GYPSY3 lost activity several million years ago since it is flanked by 4% divergent LTRs. Target site duplicates are 4 bp-long (TGTA). GYPSY3_I internal sequence encodes gag, pol, env.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 6177 positions long. The average length of non-redundant hits to the model is 832.1. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : GYPSY3_I [Requires Repbase registration]