Gypsy3_I (DF0001623)

GYPSY3_I is an internal portion of GYPSY3 endogenous retrovirus.

Description

GYPSY3_I is an internal portion of GYPSY3 endogenous retrovirus. GYPSY3's long terminal repeat LTR is GYPSY3_LTR. Presumably, GYPSY3 lost activity several million years ago since it is flanked by 4% divergent LTRs. Target site duplicates are 4 bp-long (TGTA). GYPSY3_I internal sequence encodes gag, pol, env.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Gypsy Article

Hit Statistics

The model is 6177 positions long. The average length of non-redundant hits to the model is 832.1. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Drosophila melanogaster 95 3987 77 3223

External Database Links

  • Repbase : GYPSY3_I [Requires Repbase registration]