GYPSY11_I is an internal portion of the GYPSY11 endogenous retrovirus
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GYPSY11_I is an internal portion of the GYPSY11 endogenous retrovirus. Its long terminal repeat is GYPSY11_LTR. GYPSY11_I is flanked by 7% divergent LTRs. Therefore, the age of GYPSY11 can be estimated as ~4 million years old. Open reading frames, which originally encoded gag, pol and env, are corrupted by mutations that cannot be reversed because of a small number of available copies of GYPSY11. GYPSY11 belongs to the TABOR group of GYPSY-like endogenous retroviruses.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 3524 positions long. The average length of non-redundant hits to the model is 505.3. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : GYPSY11_I [Requires Repbase registration]