G5_DM (DF0001604)

G5_DM is a non-LTR retrotransposon

Description

G5_DM belongs to the JOCKEY clade of non-LTR retrotransposons. Its copies have 3' poly(A) tail and they are flanked by ~10-bp direct repeats generated upon integration into genome. The consensus sequence contains two ORFs (positions 411-1976 and 1966-4683) that encode the 522-aa G5p1 and 906-aa G5p2 proteins, correspondingly. G5p1 is a putative DNA/RNA binding protein. G5p2 is composed of the endonuclease, reverse transcriptase and RNase H domains. retrotransposons that were recently (several million years ago) active in the Drosophila melanogaster genome.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily Jockey

Hit Statistics

The model is 4856 positions long. The average length of non-redundant hits to the model is 600. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Drosophila melanogaster 119 1940 98 1082

External Database Links

  • Repbase : G5_DM [Requires Repbase registration]