G5_DM is a non-LTR retrotransposon
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
G5_DM belongs to the JOCKEY clade of non-LTR retrotransposons. Its copies have 3' poly(A) tail and they are flanked by ~10-bp direct repeats generated upon integration into genome. The consensus sequence contains two ORFs (positions 411-1976 and 1966-4683) that encode the 522-aa G5p1 and 906-aa G5p2 proteins, correspondingly. G5p1 is a putative DNA/RNA binding protein. G5p2 is composed of the endonuclease, reverse transcriptase and RNase H domains. retrotransposons that were recently (several million years ago) active in the Drosophila melanogaster genome.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 4856 positions long. The average length of non-redundant hits to the model is 600. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : G5_DM [Requires Repbase registration]