G4_DM (DF0001602)

G4_DM is a non-LTR retrotransposon

Description

G4_DM belongs to the JOCKEY clade of non-LTR retrotransposons. Its copies have 3' poly(A) tail and they are flanked by ~10-bp direct repeats generated upon integration into genome. The consensus sequence contains two ORFs (positions 2-1078 and 1143-3725) that encode the 359-aa G4p1 and 861-aa G4p2 proteins, correspondingly. G4p1 is a putative DNA/RNA binding protein. G4p2 is composed of the endonuclease, reverse transcriptase and RNase H domains.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily Jockey

Hit Statistics

The model is 3856 positions long. The average length of non-redundant hits to the model is 567.1. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Drosophila melanogaster 95 1796 81 1334

External Database Links

  • Repbase : G4_DM [Requires Repbase registration]