FW2_DM (DF0001598)

FW2_DM is a non-LTR retrotransposon

Description

FW2_DM belongs to the JOCKEY clade of non-LTR retrotransposons. Members of this family are ~95% identical to the FW2_DM consensus sequence. Therefore, this family was active a few million years ago. The FW2_DM consensus sequence includes two open reading frames that encode the 417-aa FW2_DM-ORF1p (positions 2-1249) and 859-aa FW_DM-ORF2p (positions 1256-3832). These proteins are similar to the Jockey-like DNA/RNA-binding and endonuclease/reverse transcriptase proteins, respectively. ~500-bp 5' terminal portion of FW2_DM is not reconstructed yet. There are 10 copies of FW2_DM present in the sequenced portion of the D. melanogaster genome.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily Jockey

Hit Statistics

The model is 3961 positions long. The average length of non-redundant hits to the model is 1413.5. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Drosophila melanogaster 433 2241 409 1914

External Database Links

  • Repbase : FW2_DM [Requires Repbase registration]