DOC6_DM is a non-LTR retrotransposon
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
DOC6_DM belongs to the JOCKEY clade of non-LTR retrotransposons. Members of this family are over 99% identical to the DOC6_DM consensus sequence. Therefore, this family was active very recently. DOC6_DM encodes the 389-aa DOC6_DM-ORF1p (positions 178-1327) and the 884-aa DOC6_DM-ORF2p (positions 1328-3979) proteins most similar to the ORF1 and ORF2 protein, respectively, encoded by DOC-like non-LTR retrotransposons from the JOCKEY clade. Copies of DOC6_DM are flanked by ~15-bp target site duplications. The 3' poly(A) tails of DOC6_DN elements are formed of the (TTAAA), (TTAA) or (TAAA) microsatellites that follow the 3' AATAAA polyadenylation signal. The tail is not included in the family.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 4222 positions long. The average length of non-redundant hits to the model is 2861.8. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : DOC6_DM [Requires Repbase registration]