DOC6_DM (DF0001592)

DOC6_DM is a non-LTR retrotransposon

Description

DOC6_DM belongs to the JOCKEY clade of non-LTR retrotransposons. Members of this family are over 99% identical to the DOC6_DM consensus sequence. Therefore, this family was active very recently. DOC6_DM encodes the 389-aa DOC6_DM-ORF1p (positions 178-1327) and the 884-aa DOC6_DM-ORF2p (positions 1328-3979) proteins most similar to the ORF1 and ORF2 protein, respectively, encoded by DOC-like non-LTR retrotransposons from the JOCKEY clade. Copies of DOC6_DM are flanked by ~15-bp target site duplications. The 3' poly(A) tails of DOC6_DN elements are formed of the (TTAAA), (TTAA) or (TAAA) microsatellites that follow the 3' AATAAA polyadenylation signal. The tail is not included in the family.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily Jockey

Hit Statistics

The model is 4222 positions long. The average length of non-redundant hits to the model is 2861.8. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Drosophila melanogaster 21 254 21 167

External Database Links

  • Repbase : DOC6_DM [Requires Repbase registration]