DOC5_DM (DF0001591)

DOC5_DM is a non-LTR retrotransposon

Description

DOC5_DM belongs to the JOCKEY clade of non-LTR retrotransposons. Members of this family are ~94% identical to the DOC5_DM consensus sequence. Therefore, this family was active a few million years ago.

References

  1. Identification of Porto-1, a new repeated sequence that localises close to the centromere of chromosome 2 of Drosophila melanogaster.
    Coelho PA, Nurminsky D, Hartl D, Sunkel CE;
    Chromosoma 1996;105:211-222. Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily Jockey

Hit Statistics

The model is 4682 positions long. The average length of non-redundant hits to the model is 642.1. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Drosophila melanogaster 133 1750 117 1274

External Database Links

  • Repbase : DOC5_DM [Requires Repbase registration]