DOC5_DM is a non-LTR retrotransposon
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
DOC5_DM belongs to the JOCKEY clade of non-LTR retrotransposons. Members of this family are ~94% identical to the DOC5_DM consensus sequence. Therefore, this family was active a few million years ago.
Identification of Porto-1, a new repeated sequence that localises close to the centromere of chromosome 2 of Drosophila melanogaster.
Coelho PA, Nurminsky D, Hartl D, Sunkel CE;
Chromosoma 1996;105:211-222. Pubmed
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 4682 positions long. The average length of non-redundant hits to the model is 642.1. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : DOC5_DM [Requires Repbase registration]