DOC3_DM (DF0001589)

DOC3_DM is a non-LTR retrotransposon.

Description

DOC3_DM belongs to the JOCKEY clade of non-LTR retrotransposons. It has poly(A) tail and it generates ~10-bp target site duplications upon its integration into the genome. DOC3_DM encodes gag-like (ORF1: 200-1843) and reverse transcriptase (ORF2: 1843-4509) polyproteins.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily Jockey

Hit Statistics

The model is 4740 positions long. The average length of non-redundant hits to the model is 542.3. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Drosophila melanogaster 361 2223 209 1684

External Database Links

  • Repbase : DOC3_DM [Requires Repbase registration]