DOC3_DM is a non-LTR retrotransposon.
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
DOC3_DM belongs to the JOCKEY clade of non-LTR retrotransposons. It has poly(A) tail and it generates ~10-bp target site duplications upon its integration into the genome. DOC3_DM encodes gag-like (ORF1: 200-1843) and reverse transcriptase (ORF2: 1843-4509) polyproteins.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 4740 positions long. The average length of non-redundant hits to the model is 542.3. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : DOC3_DM [Requires Repbase registration]