DNAREP1_DM (DF0001586)

DNAREP1_DM is a putative nonautonomous DNA transposable sequence.

Description

DNAREP1_DM is one of the most ambiguous repetitive elements in the D.melanogaster genome. There are several thousand copies of DNAREP1_DM in the genome. The average divergence between DNAREP1_DM copies and the consensus sequence is 20%. Presumably, DNAREP1_DM has been mobilized in a common ancestors of Drosophilidae since its old age (>20 Myrs) and presence in different Drosophila species. It's possible that DNAREP1_DM was active in Brachycera since significant part of DNAREP1_DM has been found in promoter region of P450 gene (U09343) in the house fly genome. DNAREP1_DM is classified as a nonautonomous DNA transposon because of noticeable conservation of its termini and multiple internal deletions.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Rolling Circle
Superfamily Helitron Article

Hit Statistics

The model is 594 positions long. The average length of non-redundant hits to the model is 187.6. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Drosophila melanogaster 5889 7630 4701 6043

External Database Links

  • Repbase : DNAREP1_DM [Requires Repbase registration]