DNAREP1_DM is a putative nonautonomous DNA transposable sequence.
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
DNAREP1_DM is one of the most ambiguous repetitive elements in the D.melanogaster genome. There are several thousand copies of DNAREP1_DM in the genome. The average divergence between DNAREP1_DM copies and the consensus sequence is 20%. Presumably, DNAREP1_DM has been mobilized in a common ancestors of Drosophilidae since its old age (>20 Myrs) and presence in different Drosophila species. It's possible that DNAREP1_DM was active in Brachycera since significant part of DNAREP1_DM has been found in promoter region of P450 gene (U09343) in the house fly genome. DNAREP1_DM is classified as a nonautonomous DNA transposon because of noticeable conservation of its termini and multiple internal deletions.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 594 positions long. The average length of non-redundant hits to the model is 187.6. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : DNAREP1_DM [Requires Repbase registration]