DMRT1B is a non-LTR retrotransposon, a consensus sequence.
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
DMRT1B belongs to the R1 clade of non-LTR retrotransposons. It has two ORFs. ORF1 encodes a putative nucleic acid binding protein. ORF2 encodes reverse transcriptase.
Identification of Waldo-A and Waldo-B, two closely related non-LTR retrotransposons in Drosophila.
Busseau I, Berezikov E, Bucheton A;
Mol Biol Evol 2001;18:196-205. Pubmed
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 5183 positions long. The average length of non-redundant hits to the model is 1150.1. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : DMRT1B [Requires Repbase registration]