DMRT1A (DF0001581)

DMRT1A is a non-LTR retrotransposon, a consensus sequence.

Description

DMRT1A belongs to the R1 clade of non-LTR retrotransposons. It has two ORFs. ORF1 encodes a putative nucleic acid binding protein. This protein is most close to the proteins encoded by ORF1s in the I elements found in Drosophila melanogaster and Drosophila teissieri. However, its reverse transcriptase encoded by ORF2 is most close to the reverse transcriptase encoded by RT1, RT2 and SART1 non_LTR retrotransposons found in Anopheles gambiae and Bombyx mori. DMRT1A copies are flanked by ~12-bp target site duplications.

References

  1. Identification of Waldo-A and Waldo-B, two closely related non-LTR retrotransposons in Drosophila.
    Busseau I, Berezikov E, Bucheton A;
    Mol Biol Evol 2001;18:196-205. Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily R1

Hit Statistics

The model is 5183 positions long. The average length of non-redundant hits to the model is 1160.9. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Drosophila melanogaster 157 817 148 715

External Database Links

  • Repbase : DMRT1A [Requires Repbase registration]