DMCR1A (DF0001577)

DMCR1A is a non_LTR retrotransposon.

Description

DMCR1A belongs to the CR1 superfamily of non-LTR retrotransposons. It has two ORFs. ORF1 encodes a putative nucleic acid binding protein which includes the zinc-finger domain and is distantly similar to a protein encoded the non-LTR retrotransposon T1_AG in African malaria mosquito. ORF2 encodes reverse transcriptase close to RT from T1_AG and CR1.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily CR1

Hit Statistics

The model is 4470 positions long. The average length of non-redundant hits to the model is 650.7. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Drosophila melanogaster 1169 1691 1108 1525

External Database Links

  • Repbase : DMCR1A [Requires Repbase registration]