DIVER_I is an internal portion of DIVER retrovirus-like element
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
LTR of DIVER retrotransposon is DIVER_LTR. DIVER may be an active retrovirus since some of its copies are identical. Target site duplication is 5 bp-long. DIVER_I internal sequence encodes 1747 aa-long polyprotein (nucleotide position 332-5572) similar to the ones encoded by BEL and ROO retroviruses. These retroviruses form separate BCDPR superfamily (an abbreviation of Bel-Catch-Diver-Pao-Roo retroviruses). Members of this superfamily are present in vertebrates (fish retrovirus CATCH). DIVER's polyprotein contains gag-like zinc-finger domain (aa position 320-410); reverse transcriptase domain (aa position 810-910) and endonuclease/integrase domain (1350-1620). All these domain are significantly similar to the domains encoded by different mammalian retroviruses.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 5643 positions long. The average length of non-redundant hits to the model is 1628.8. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : DIVER_I [Requires Repbase registration]