Internal portion of Chouto retrovirus-like element.
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
Conceptual translation suggests that ORF1 and ORF2 overlap 61 nucleotides. There is a one-nucletide frameshift (+1) between both ORFs.
Widespread evidence for horizontal transfer of transposable elements across Drosophila genomes.
Bartolomé C, Bello X, Maside X;
Genome Biol 2009;10:R22-R22. Pubmed
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 5715 positions long. The average length of non-redundant hits to the model is 699. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : Chouto_I [Requires Repbase registration]