Chouto_I (DF0001556)

Internal portion of Chouto retrovirus-like element.

Description

Conceptual translation suggests that ORF1 and ORF2 overlap 61 nucleotides. There is a one-nucletide frameshift (+1) between both ORFs.

References

  1. Widespread evidence for horizontal transfer of transposable elements across Drosophila genomes.
    Bartolomé C, Bello X, Maside X;
    Genome Biol 2009;10:R22-R22. Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Gypsy Article

Hit Statistics

The model is 5715 positions long. The average length of non-redundant hits to the model is 699. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Drosophila melanogaster 171 3304 155 2757

External Database Links

  • Repbase : Chouto_I [Requires Repbase registration]