Bica_I (DF0001542)

Internal portion of Bica retrovirus-like element.

Description

Gag domain: [1073-1327]; Retroviral aspartyl protease: [1661-1945]; Reverse transcriptase (RNA-dependent DNA polymerase): [2243-2776]; Integrase core domain: Positions [3869-4315]

References

  1. Widespread evidence for horizontal transfer of transposable elements across Drosophila genomes.
    Bartolomé C, Bello X, Maside X;
    Genome Biol 2009;10:R22-R22. Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Gypsy Article

Hit Statistics

The model is 4778 positions long. The average length of non-redundant hits to the model is 1166.5. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Drosophila melanogaster 77 873 71 474

External Database Links

  • Repbase : Bica_I [Requires Repbase registration]