ACCORD_I (DF0001532)

ACCORD_I is an internal portion of ACCORD retrovirus-like element

Description

LTR of ACCORD retrotransposon is ACCORD_LTR. ACCORD may be an active retrovirus since some of its proviral copies are almost identical and flanked by identical LTRs. ACCORD has a target-site specificity: it generates duplication of the CGYG target-site upon its integration into the drosophila genome. ACCORD_I internal sequence encodes gag (position 994-2043), pol (position 1998-5537) and env-like (position 4477-6033) polyproteins.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Gypsy Article

Hit Statistics

The model is 6288 positions long. The average length of non-redundant hits to the model is 681.4. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Drosophila melanogaster 139 3476 113 2862

External Database Links

  • Repbase : ACCORD_I [Requires Repbase registration]