ACCORD_I is an internal portion of ACCORD retrovirus-like element
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
LTR of ACCORD retrotransposon is ACCORD_LTR. ACCORD may be an active retrovirus since some of its proviral copies are almost identical and flanked by identical LTRs. ACCORD has a target-site specificity: it generates duplication of the CGYG target-site upon its integration into the drosophila genome. ACCORD_I internal sequence encodes gag (position 994-2043), pol (position 1998-5537) and env-like (position 4477-6033) polyproteins.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 6288 positions long. The average length of non-redundant hits to the model is 681.4. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : ACCORD_I [Requires Repbase registration]