SINE1_CE (DF0001522)

SINE1_CE is a putative SINE-like retroposon

Description

SINE1_CE is a putative SINE-like retroelement. It's possible that this repeat is a 3'-tail of CR1(LINE2)-like non-LTR retrotransposon since it does not generate duplications of target sites upon its integration in the genome and has AATAAA(TTA)n 3'-tail.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class SINE
Superfamily R2?

Note: Uncertain classification.

Hit Statistics

The model is 261 positions long. The average length of non-redundant hits to the model is 169.4. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Caenorhabditis elegans 76 95 54 63

External Database Links

  • Repbase : SINE1_CE [Requires Repbase registration]