Mariner2_CE (DF0001516)

Autonomous DNA transposon from C. elegans

Description

MARINER2_CA is a putative active autonomous DNA transposon; there are about 50 identical copies of MARINER2_CA fixed in the C.elegans genome. MARINER2_CA is flanked by TA target site duplications and it has perfect 27 bp-long terminal inverted repeats. Transposase is encoded by a single ORF (position 150-1151). MARINER2 transposase is most close to the one encoded by the human MARINER element (42% similarity and 60% identity between amino acid sequences).

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily TcMar-Mariner

Hit Statistics

The model is 1242 positions long. The average length of non-redundant hits to the model is 941.9. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Caenorhabditis elegans 93 405 79 196

External Database Links

  • Repbase : MARINER2_CE [Requires Repbase registration]