Turmoil2 (DF0001492)

DNA transposon TURMOIL2.

Description

TURMOIL2 encodes HARBINGER-like transposase. The most conservative domain of the transposase is encoded by regions 3922-4137 and 4199-4651. The TURMOIL2 transposase is most similar to the transposase encoded by the TURMOIL1 transposon. Both transposons do not share similar DNA fragments but they have one remarkable hallmark being flanked by long terminal inverted repeats. TURMOIL2 is flanked by almost identical 1900-bp TIRs.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily PIF-Harbinger

Hit Statistics

The model is 6999 positions long. The average length of non-redundant hits to the model is 3578.5. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Caenorhabditis elegans 2 7 2 7

External Database Links

  • Repbase : TURMOIL2 [Requires Repbase registration]