DNA transposon TURMOIL1.
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
TURMOIL1 encodes HARBINGER-like transposase. The most conservative domain of the transposase is encoded by the region 3379-4097. The TURMOIL1 transposase is most similar to the transposase encoded by the TURMOIL2 transposon. The two transposons do not share any similar DNA fragments but they have one remarkable hallmark being flanked by long terminal inverted repeats. TURMOIL1 is flanked by almost identical 777-bp TIRs.
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 5024 positions long. The average length of non-redundant hits to the model is 753.8. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : TURMOIL1 [Requires Repbase registration]