TC5A (DF0001480)

TC5B nonautonomous DNA transposon

Description

TC5A is a nonautonomous DNA transposon derived from TC5-like autonomous transposon. TC5A elements are flanked by 3 bp-long target-site duplications (duplications of TNA in CTNAG targets sites) and 773 bp-long terminal inverted repeats.

References

  1. Identification of putative nonautonomous transposable elements associated with several transposon families in Caenorhabditis elegans.
    Oosumi T, Garlick B, Belknap WR;
    J Mol Evol 1996;43:11-18. Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily TcMar-Tc4

Hit Statistics

The model is 1608 positions long. The average length of non-redundant hits to the model is 560.8. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Caenorhabditis elegans 80 1549 50 391

External Database Links

  • Repbase : TC5A [Requires Repbase registration]