PALNN1_CE (DF0001459)

nonautonomous DNA transposon, consensus sequence.

Description

PALNN1_CE elements generate 2 bp-long target-site duplications; PALNN1_CE forms almost perfect palindrome. This family of transposable elements is very young (it may be still active in the C.elegans genome) since there is only 0.005% average divergence of PALNN1_CE copies from the consensus sequence.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily CMC-Mirage

Hit Statistics

The model is 210 positions long. The average length of non-redundant hits to the model is 163.9. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Caenorhabditis elegans 48 240 33 142

External Database Links

  • Repbase : PALNN1_CE [Requires Repbase registration]