PAL8B_CE (DF0001452)

PAL8B_CE is a putative non-autonomous DNA transposon

Description

PAL8B_CE is a putative non-autonomous DNA transposon; it has perfect 49 bp-long terminal inverted repeat and generates duplications of 8 bp-long target sites upon its integration in the genome. The PAL8B_CE nucleotide sequence forms a palindrome-like structure with a 140 bp-long stem. Multiple transpositions of PAL8B_CE were likely induced by HAT-like transposase.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT

Hit Statistics

The model is 386 positions long. The average length of non-redundant hits to the model is 241.7. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Caenorhabditis elegans 22 89 20 81

External Database Links

  • Repbase : PAL8B_CE [Requires Repbase registration]