PAL8A_CE (DF0001451)

PAL8A_CE is a putative nonautonomous DNA transposon

Description

PAL8A_CE is a putative non-autonomous DNA transposon; it has almost perfect 34 bp-long terminal inverted repeat and generates duplications of 8 bp-long target sites upon its integration in the genome. The PAL8A_CE nucleotide sequence forms a palindrome-like structure (its unpaired central loop is only several nucleotides long). Multiple transpositions of PAL8A_CE were likely induced by HAT-like transposase.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT

Hit Statistics

The model is 389 positions long. The average length of non-redundant hits to the model is 311.1. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Caenorhabditis elegans 29 81 23 65

External Database Links

  • Repbase : PAL8A_CE [Requires Repbase registration]