PAL8A_CE is a putative nonautonomous DNA transposon
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PAL8A_CE is a putative non-autonomous DNA transposon; it has almost perfect 34 bp-long terminal inverted repeat and generates duplications of 8 bp-long target sites upon its integration in the genome. The PAL8A_CE nucleotide sequence forms a palindrome-like structure (its unpaired central loop is only several nucleotides long). Multiple transpositions of PAL8A_CE were likely induced by HAT-like transposase.
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 389 positions long. The average length of non-redundant hits to the model is 311.1. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : PAL8A_CE [Requires Repbase registration]