NPALTA1_CE (DF0001447)

NPALTA1_CE is a putative non-autonomous DNA transposon

Description

NPALTA1_CE is a putative non-autonomous DNA transposon. It generates TA target-site duplications. NPALTA1_CE is flanked by 49 bp-long terminal inverted repeats and it forms a non-perfect palindrome with a 18 bp-long central loop. Mariner/Tc1-like transposase seems to have been involved in transpositions of the NAPLTA1_CE sequences.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily Undefined

Hit Statistics

The model is 177 positions long. The average length of non-redundant hits to the model is 117.9. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Caenorhabditis elegans 396 1342 245 592

External Database Links

  • Repbase : NPALTA1_CE [Requires Repbase registration]