LONGPAL1 nonautonomous DNA transposon
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LONGPAL1 is a putative non-autonomous DNA transposon; it forms an almost perfect 1200 bp-long palindrome and generates duplication of 9 bp-long target site upon its integration in the genome. The length of the target site duplications indicates that transposase encoded by the autonomous LONPAL1-like element may be related to Mudr-like family. LONGPAL1 may be still mobile since some of its individual copies are more than 99% identical with the consensus sequence.
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 2591 positions long. The average length of non-redundant hits to the model is 490.8. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : LONGPAL1 [Requires Repbase registration]